I seem to recall Campiti saying in at least one of the ShadowGram interviews that they planned to start to work what the show had planned for Season 2 into the comic once they began Book 5, Issue 1. Though, of course, they never got anywhere near that far into the comic...
Actually, they planned to do it earlier. While I was looking for info about Lara Parker's presentation on the MPI VHS Vol. 195, I saw a comment in SG that Book 4 was going to pick up where the series left off with Vicki's return to the present. Book 4 was also to be Campiti's collaboration with Lara Parker for which they developed some of what eventually turned into
Angelique's Descent. But to me, anyway, the most intriguing part of Book 4 was that it was going to explain more about Laura. But alas...
Interestingly, some of the artwork for Book 4 had already been completed before Innovation went under and SG shared some of it. Though it'll be quite a while before we ever reach that point in the SG issues...